PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00064.1_g00042.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 275aa    MW: 31509.6 Da    PI: 5.0542
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00064.1_g00042.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-182168148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT++Ed +lv+ v  +G  +W+ Iar  g++Rt+k+c++rw++yl
  Rsa1.0_00064.1_g00042.1 21 KGPWTEDEDAILVNFVSIHGDARWNHIARSSGLKRTGKSCRLRWLNYL 68
                             79********************************************97 PP

2Myb_DNA-binding46.87e-1574117146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg+ T eE+  +++++ ++G++ W++Ia++++ gRt++++k++w++
  Rsa1.0_00064.1_g00042.1  74 RGNITLEEQFMILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117
                              7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.1561672IPR017930Myb domain
SuperFamilySSF466892.4E-3018115IPR009057Homeodomain-like
SMARTSM007172.1E-152070IPR001005SANT/Myb domain
PfamPF002495.4E-162168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-222275IPR009057Homeodomain-like
CDDcd001675.66E-122368No hitNo description
PROSITE profilePS5129418.09873123IPR017930Myb domain
SMARTSM007171.1E-1373121IPR001005SANT/Myb domain
PfamPF002491.8E-1374117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2276122IPR009057Homeodomain-like
CDDcd001671.67E-1078117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEDYERSSNS PTHEEDADVR KGPWTEDEDA ILVNFVSIHG DARWNHIARS SGLKRTGKSC  60
RLRWLNYLRP DVRRGNITLE EQFMILKLHS LWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ  120
KQAKHLRCDV NSNLFKETMK NVWMPRLVER INAQTPSPTY EQVDSMVTDP SQPTAEPSPV  180
EPGFVQFNQN HYCHQQHFVP ASDVSATSSN SPADETLSEV RGGVVNGSGD EPADQTGFGG  240
FNDWGCVGGD NTWTDDENFW FLQELCNETT SYSYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25181234108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009142557.10.0PREDICTED: transcription factor MYB108
SwissprotQ9LDE13e-69MY108_ARATH; Transcription factor MYB108
TrEMBLM4CJT90.0M4CJT9_BRARP; Uncharacterized protein
STRINGBra004473.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-177myb domain protein 2